deepbiop.bam
============

.. py:module:: deepbiop.bam


Functions
---------

.. autoapisummary::

   deepbiop.bam.count_chimeric_reads_for_path
   deepbiop.bam.count_chimeric_reads_for_paths
   deepbiop.bam.left_right_soft_clip


Module Contents
---------------

.. py:function:: count_chimeric_reads_for_path(bam, threads = None)

   Calculate the number of chimeric reads in a BAM file.


.. py:function:: count_chimeric_reads_for_paths(bams, threads = None)

   Calculate the number of chimeric reads in multiple BAM files.


.. py:function:: left_right_soft_clip(cigar_string)

   Calculate left and right soft clips from a cigar string.